Trans-eQTLs across different cancer types
In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
Gene symbol
|
Gene position (hg19)
|
p-valule
|
|||
---|---|---|---|---|---|---|---|---|---|
THCA | rs7850258 | chr9:100549013 | C/T | EPDR1 | chr7:37723446-37991543:+ | -0.32 | -7.08 | 5.18E-12 | Box Plot |
THCA | rs7850258 | chr9:100549013 | C/T | GGT5 | chr22:24615622-24641110:- | -0.26 | -6 | 3.98E-9 | Box Plot |
THCA | rs7850258 | chr9:100549013 | C/T | NKX6-1 | chr4:85413140-85419603:- | -0.5 | -8.49 | 2.62E-16 | Box Plot |
THCA | rs78523677 | chr5:176551103 | C/A | LOC388955 | chr2:63849182-63850159:- | -0.82 | -21.4 | 9.68E-72 | Box Plot |
THCA | rs78571503 | chr7:140127204 | G/A | LOC441455 | chr9:99488103-99489749:+ | 0.53 | 6.71 | 5.58E-11 | Box Plot |
THCA | rs78573204 | chr3:96809412 | A/G | PRPF31 | chr19:54618790-54635150:+ | -0.37 | -5.93 | 5.73E-9 | Box Plot |
THCA | rs78580055 | chr22:24046252 | A/C | IGLL3 | chr22:25713888-25716191:+ | 0.69 | 9.89 | 4.3E-21 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | BMPR1A | chr10:88516358-88692595:+ | -0.24 | -6.19 | 1.33E-9 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | CLDN2 | chrX:106143394-106174091:+ | 0.26 | 6.07 | 2.56E-9 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | EML5 | chr14:89078775-89259096:- | 0.3 | 6.86 | 2.13E-11 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | EPDR1 | chr7:37723446-37991543:+ | 0.32 | 7.11 | 4.27E-12 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | GGT5 | chr22:24615622-24641110:- | 0.26 | 5.95 | 5.33E-9 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | LRRC42 | chr1:54411750-54433841:+ | -0.23 | -6.06 | 2.78E-9 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | NKX6-1 | chr4:85413140-85419603:- | 0.5 | 8.81 | 2.25E-17 | Box Plot |
THCA | rs7864322 | chr9:100548934 | C/T | PLCE1 | chr10:95790569-96092580:+ | 0.27 | 6.15 | 1.64E-9 | Box Plot |